PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 540aa    MW: 59569.9 Da    PI: 7.0209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99680.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-17332378455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  KHM99680.1 332 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 378
                 6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.7E-19325385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-20326389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.27E-16331376No hitNo description
PfamPF000104.9E-15332378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-18334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MNNSVPDWNF GSDSCVTSTN QKKPMMGVDQ ELVELLWQNG QVVLHSQTHR KPVVNSSNLI  60
QDDETVSWIQ YPLEDPLEQE FCSNLLSELA PCEVESYKQI KPFEEGKFTK LDASSAPHVT  120
VSSQSPTMKS SSFQDFSGIP IPAPRFHVSD SPQKNNNHLG GSCKVQNFSH FSAPLNVSSA  180
SANVHFGDKI TGNMSRNEIR ECSLMTVGSS YCGSNHIPQD PDASRASSNG VWTTTLSVEP  240
EAVRDDVPKT IPQKEKGKSE MLEPAVTSSS GGSGSSLGKT CSLSTRNQGQ KRKGIDVEES  300
EEQSEDTELK SALGNKSSQR TGSARRNRAA EVHNLSERRR RDRINEKMKA LQQLIPHSSK  360
TDKASMLEEA IEYLKSLQLQ LQLMWMGSGM APIMFPGIQH YMSQMGMGMA RPPFPPPIHN  420
PMQLPRVPLD KSVSASQTPN QTLMCQNPIL GAFNYQNQMQ NPALSEQYVR YMGYHLMQNA  480
SQPMNVFRYG PQGVQHSQTM ITPSSNSSGN MSGAANIDEA VSGKMGKPLT FFTLLWLTTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336341ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352430.0AC235243.1 Glycine max strain Williams 82 clone GM_WBb0032L23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532070.20.0PREDICTED: transcription factor PIF4-like isoform X1
RefseqXP_006586042.10.0PREDICTED: transcription factor PIF4-like isoform X1
TrEMBLA0A0B2NRH50.0A0A0B2NRH5_GLYSO; Transcription factor PIF5
STRINGGLYMA08G41620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.29e-46phytochrome interacting factor 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]